PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G063387_P01
Common NameLOC100383020, ZEAMMB73_476307
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family E2F/DP
Protein Properties Length: 387aa    MW: 41746.4 Da    PI: 6.6122
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G063387_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.44.4e-27129215371
            E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  GRMZM2G063387_P01 129 NRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEftdpnnnieapdpdnpnaqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 215
                        689*******...*****999************************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.9E-12734386IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.105.3E-45123221IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.8E-38127215IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.2E-25130215IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.9E-20130216IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.88E-43220323IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.07E-41222336No hitNo description
SMARTSM011381.8E-79222384IPR014889Transcription factor DP, C-terminal
PfamPF087814.0E-41223358IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MVSGAAHNPG GGAAAQTTQR SPPQLGARTA LATPPPVSGG AAHSASTSGG TAGSPPSSRS  60
EQHAPDGAVK GPALGTAPAA AAASTPASDS TFLRLNNLDI NGDDAPSSQA PTSKKKRRGT  120
RAVGPDKGNR GLRQFSMKVC EKVESKGRTT YNEVADELVA EFTDPNNNIE APDPDNPNAQ  180
QYDEKNIRRR VYDALNVLMA MDIISKDKKE IQWKGLPRTS ISDIEELKTE LVGLKGRIEK  240
KSVYLQELQD QYVGLQNLIQ RNEQLYGSGN TPSGGVALPF ILVQTRPHAT VEVEISEDMQ  300
LVHFDFNSTP FELHDDSYVL KEMRFCGREQ HDGTQESISN GGESSNVSNI YWQQAQRMEM  360
PNNGTVRLSS SPPIPGILKG RVKHEQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B8e-35121220193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113117KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1380380.0meristem| pericarp| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G063387
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G063387_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0659570.0BT065957.1 Zea mays full-length cDNA clone ZM_BFb0087C01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169170.10.0uncharacterized protein LOC100383020
SwissprotQ9FNY21e-137DPB_ARATH; Transcription factor-like protein DPB
TrEMBLC0PCD80.0C0PCD8_MAIZE; Uncharacterized protein
STRINGGRMZM2G063387_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Representative plantOGRP25111734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-136Transcription factor DP